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钟伯坚

教授、博士生导师

Email: bjzhong@gmail.com; zhongbojian566@126.com

 

基本情况:

钟伯坚,教授、博士生导师,江苏省“青蓝工程”中青年学术带头人,江苏省六大人才高峰高层次人才。主要从事植物进化基因组学的研究工作,发表SCI收录论文20余篇,其中2篇曾入选ESI高被引论文。作为通讯作者(含共同通讯)在Current BiologyTrends in Plant ScienceSystematic BiologyMolecular PlantMolecular Biology and Evolution等国际主流期刊发表论文18篇。

 

学习和工作经历:
201411-至今,南京师范大学生命科学学院,教授

2010-2014新西兰梅西大学,博士(导师David Penny教授;助理讲师(20142-11月)
2007-2010年,复旦大学,硕士(导师钟扬教授、Masami Hasegawa教授
2003-2007年,中国地质大学(武汉),学士

 

研究方向:

植物系统发育基因组学

植物多样性与适应性进化

植物光信号通路的分子演化

 

主持科研项目:

  1. 国家自然科学基金面上项目,2020-2023
  2. 国家自然科学基金面上项目,2016-2019
  3. 江苏省自然科学研究重大项目,2016-2019
  4. 江苏省六大人才高峰高层次人才基金,2016-2019
  5. 江苏省基础研究计划(自然科学基金),2015-2018
  6. 南京师范大学百名青年领军人才基金,2015-2019

 

获奖与荣誉称号

江苏省科协“青年科技人才托举工程”(2018年)

南京师范大学“中青年领军人才”(2018年)

江苏省第十三批“六大人才高峰”高层次人才(2016年)

江苏省“青蓝工程”中青年学术带头人(2016年)

南京师范大学“青蓝工程”中青年学术带头人(2016年)

南京师范大学百名青年领军人才(2014年)

梅西大学Dean’s List of Exceptional Doctoral Theses2014年)

国家优秀自费留学生奖学金(2012年)

上海市研究生优秀成果(2012年)

复旦大学优秀毕业生(2010年)

 

学术兼职:

1. 中国植物学会植物分类与系统进化专业委员会委员,中国植物生理与植物分子生物学学会青年工作委员会委员;江苏省植物生理学会青年工作委员会主任及理事,江苏省植物学会青年工作委员会副主任;第六届中国青年科技工作者协会会员,江苏省青年联合会第十二届委员会委员,江苏省青年科协常委。

2. Journal of Systematics and Evolution副主编;基金委国家自然科学基金、欧盟研究理事会ERC和捷克国家科学基金等评审专家;Trends in Plant Science, Molecular Biology and EvolutionNew Phytologist等期刊审稿人;教育部学位与研究生教育发展中心学位论文评审专家。

 

代表性论文(*通讯作者,同等贡献):

  1. Zhang Z, Qu C, Zhang K, He Y, Zhao X, Yang L,…, Leliaert F, Bhattacharya D, De Clerck O,Zhong B*(Lead Contact), Miao J*(2020). Adaptation to extreme Antarctic environments revealed by the genome of a sea ice green alga. Current Biology.DOI:https://doi.org/10.1016/j.cub.2020.06.029.

  2. Nie Y, Foster C, Zhu T, Yao R, Duchêne D, Ho S, Zhong B* (2020). Accounting for uncertainty in the evolutionary timescale of green plants through clock-partitioning and fossil calibration strategies. Systematic Biology. 69: 1-16.
  3. Yang L, Su D, Chang X, Foster C, Sun L, Huang C, Zhou X, Zeng L, Ma H, Zhong B* (2020). Phylogenomic insights into deep phylogeny of angiosperms based on broad nuclear gene sampling. Plant Communications.1: 100027.
  4. HanX, ChangX, ZhangZ, ChenH, HeH*, Zhong B*, DengX* (2019). Origin and evolution of core components responsible for monitoring light environment changes during plant terrestrialization. Molecular Plant.12: 847-862.
  5. Zhang Z, Qu C, Yao R, Nie Y, Xu C, Miao J, Zhong B*(2019).The parallel molecular adaptations to the Antarctic cold environment in two psychrophilic green algae. Genome Biology and Evolution.11: 1897-1908.
  6. Fang L, Leliaert F,Novis P, Zhang Z, Zhu H, Liu G, Penny D, Zhong B*(2018). Improving phylogenetic inference of core Chlorophyta using chloroplast sequences with strong phylogenetic signals and heterogeneous models. Molecular Phylogenetics and Evolution. 127: 248-255.
  7. Fang L, Leliaert F, Zhang Z, Penny D, ZhongB* (2017). Evolution of theChlorophyta: Insights from chloroplast phylogenomic analyses. Journal of Systematics and Evolution. 55: 322-332.
  8. Zhong B*, Betancur-RR* (2017). Expanded taxonomic sampling coupledwith gene genealogy interrogation provides unambiguous resolution for the evolutionary root of angiosperms.Genome Biology and Evolution.9: 3154-3161.
  9. Zhong B*, Xi Z, Goremykin V, Fong R, McLenachan T, Novis P, Davis C, PennyD (2014). Streptophyte algae and the origin of land plants revisited using heterogeneous models with three new algal chloroplast genomes. Molecular Biology and Evolution. 31: 177-183.
  10. Zhong B*, Liu L, Yan Z, Penny D (2013). Origin of land plants using the multispecies coalescent model. Trends in Plant Science. 18: 492-495.
  11. Zhong B*,Yonezawa T, Zhong Y, Hasegawa M* (2010).The position of Gnetalesamong seed plants: Overcoming pitfalls of chloroplast phylogenomics. Molecular Biology and Evolution. 27: 2855-2863.

 

其他论文(*通讯作者,同等贡献):

  1. Zhang Z, Chang X, Su D, Yao R, Liu X, Zhu H, Liu G, Zhong B*(2020). Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau. Journal of Systematics and Evolution. https://doi.org/10.1111/jse.12589.
  2. Zhang Z, An M, Miao J, Gu Z, Liu C, Zhong B* (2018). The Antarctic sea ice algaChlamydomonas sp. ICE-L provides insights into adaptive patterns of chloroplast evolution. BMC Plant Biology. 18: 53.
  3. Sun L, Fang L, Zhang Z, Penny D, Zhong B* (2016). Chloroplast phylogenomic inference of green algae relationships. Scientific Reports. 6: 20528.
  4. FinetC*, Floyd S, ConwayS, Zhong B,ScuttC, Bowman J (2016) Evolution of the YABBY gene family in seed plants.Evolution& Development. 18: 116-126.
  5. EdwardsS *, Xi Z, JankeA, FairclothB, McCormackJ, GlennT, Zhong B, Wu S, Lemmon E, LemmonA, LeachéA, Liu L, Davis C (2016). Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics.Molecular Phylogenetics and Evolution. 94: 447-462.
  6. Zhong B*, Sun L, Penny D (2015). The origin of land plants: a phylogenomic perspective. Evolutionary Bioinformatics. 11: 137-141.
  7. Penny D*, Zhong B (2015).Two fundamental questions about protein evolution. Biochimie. 119: 278-283.
  8. Zhong B*, Liu L*, Penny D (2014). The multispecies coalescent model and land plant origins: a reply to Springer and Gatesy. Trends in Plant Science. 19:270-272.
  9. Zhong B*, Fong R, Collins L, McLenachanT, Penny D (2014). Two new fern chloroplasts and decelerated evolution linked to the long generation time in tree ferns. Genome Biology and Evolution. 6: 1166-1173.
  10. GoremykinV *, Nikiforova S, Biggs P,Zhong B, DeLange P, MartinW, WoetzelS, Atherton R, McLenachan T, Lockhart P (2013). The evolutionary root of flowering plants. Systematic Biology. 62: 51-62.
  11. White W, Zhong B, Penny D* (2013). Beyond reasonable doubt: evolution from DNA sequences. PLoS ONE. 8: e69924.
  12. Zhong B*, Deusch O, Goremykin V, Penny D, Biggs P, Atherton R, NikiforovaS, LockhartP (2011). Systematic error in seed plant phylogenomics. Genome Biology and Evolution. 3:1340-1348.
  13. Zhong B, Yonezawa T, Zhong Y, Hasegawa M* (2009). Episodic evolution and adaptation of chloroplast genomes in ancestral grasses. PLoS ONE. 4: e5297.
  14. HasegawaM*,ZhongB, Zhong Y(2009). Adaptive evolution of chloroplast genomes in ancestral grasses.Plant Signaling & Behavior. 4: 623-624.